Detailed information of SNP:



SNP ID: sf1203656862(Gbrowse)

Chromosome: chr12

Position: 3656862
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 94.43% 5.57%
All Indica799 100.00% 0.00%
All Japonica496 84.48% 15.52%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 78.74% 21.26%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 92.65% 7.35%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1203656862 A->G INTERGENIC None