Detailed information of SNP:
|
SNP ID:
sf1203658266(Gbrowse)
Chromosome: chr12 Position: 3658266 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.17% | 46.83% |
| All Indica | 799 | 89.49% | 10.51% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 33.33% | 66.67% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203658266 | G->A | LOC_Os12g07410(LOC_Os12g07410.1) | Non-Synonymous SNP |