Detailed information of SNP:
|
SNP ID:
sf1203659129(Gbrowse)
Chromosome: chr12 Position: 3659129 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 90.76% | 9.24% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 496 | 83.87% | 16.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 334 | 78.74% | 21.26% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203659129 | A->G | INTERGENIC | None |