Detailed information of SNP:
|
SNP ID:
sf1203667849(Gbrowse)
Chromosome: chr12 Position: 3667849 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1256 | 65.84% | 34.16% |
| All Indica | 638 | 33.70% | 66.30% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 272 | 34.93% | 65.07% |
| Indica II | 191 | 28.80% | 71.20% |
| Indica Intermediate | 175 | 37.14% | 62.86% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203667849 | C->A | LOC_Os12g07440(LOC_Os12g07440.1) | Non-Synonymous SNP |