Detailed information of SNP:
|
SNP ID:
sf1203672793(Gbrowse)
Chromosome: chr12 Position: 3672793 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.86% | 32.14% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 497 | 17.71% | 82.29% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 21.79% | 78.21% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203672793 | C->A | LOC_Os12g07450(LOC_Os12g07450.1) | INTRON |
| sf1203672793 | C->A | LOC_Os12g07450(LOC_Os12g07450.3) | INTRON |
| sf1203672793 | C->A | LOC_Os12g07450(LOC_Os12g07450.2) | INTRON |