Detailed information of SNP:
|
SNP ID:
sf1203686734(Gbrowse)
Chromosome: chr12 Position: 3686734 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 84.97% | 15.03% |
| All Indica | 730 | 73.15% | 26.85% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 336 | 63.39% | 36.61% |
| Indica II | 200 | 89.50% | 10.50% |
| Indica Intermediate | 194 | 73.20% | 26.80% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203686734 | C->T | INTERGENIC | None |