Detailed information of SNP:
|
SNP ID:
sf1203783793(Gbrowse)
Chromosome: chr12 Position: 3783793 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1214 | 97.69% | 2.31% |
| All Indica | 647 | 96.91% | 3.09% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 24 | 66.67% | 33.33% |
| Indica I | 254 | 95.67% | 4.33% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 181 | 96.69% | 3.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203783793 | G->A | INTERGENIC | None |