Detailed information of SNP:
|
SNP ID:
sf1203787124(Gbrowse)
Chromosome: chr12 Position: 3787124 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1197 | 79.53% | 20.47% |
| All Indica | 796 | 99.50% | 0.50% |
| All Japonica | 283 | 25.80% | 74.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 182 | 35.16% | 64.84% |
| Tropical Japonica | 60 | 6.67% | 93.33% |
| Japonica Intermediate | 41 | 12.20% | 87.80% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203787124 | T->C | INTERGENIC | None |