Detailed information of SNP:
|
SNP ID:
sf1203837791(Gbrowse)
Chromosome: chr12 Position: 3837791 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 96.61% | 3.39% |
| All Indica | 797 | 95.73% | 4.27% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203837791 | C->A | INTERGENIC | None |