Detailed information of SNP:
|
SNP ID:
sf1203841139(Gbrowse)
Chromosome: chr12 Position: 3841139 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 60.11% | 39.89% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 493 | 2.84% | 97.16% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 90 | 7.78% | 92.22% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203841139 | A->C | LOC_Os12g07640(LOC_Os12g07640.1) | UTR_3_PRIME |