Detailed information of SNP:



SNP ID: sf1203863712(Gbrowse)

Chromosome: chr12

Position: 3863712
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 60.16% 39.84%
All Indica799 94.62% 5.38%
All Japonica497 3.02% 96.98%
Aus66 92.42% 7.58%
Indica I375 98.13% 1.87%
Indica II213 94.37% 5.63%
Indica Intermediate211 88.63% 11.37%
Temperate Japonica335 0.00% 100.00%
Tropical Japonica94 10.64% 89.36%
Japonica Intermediate68 7.35% 92.65%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 47.62% 52.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1203863712 A->G INTERGENIC None