Detailed information of SNP:
|
SNP ID:
sf1203863712(Gbrowse)
Chromosome: chr12 Position: 3863712 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.16% | 39.84% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203863712 | A->G | INTERGENIC | None |