Detailed information of SNP:
|
SNP ID:
sf1203871984(Gbrowse)
Chromosome: chr12 Position: 3871984 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 85.46% | 14.54% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 451 | 57.21% | 42.79% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 301 | 44.19% | 55.81% |
| Tropical Japonica | 84 | 97.62% | 2.38% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203871984 | A->G | INTERGENIC | None |