Detailed information of SNP:
|
SNP ID:
sf1203905172(Gbrowse)
Chromosome: chr12 Position: 3905172 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1320 | 90.45% | 9.55% |
| All Indica | 704 | 83.95% | 16.05% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 331 | 87.01% | 12.99% |
| Indica II | 189 | 80.95% | 19.05% |
| Indica Intermediate | 184 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203905172 | A->G | INTERGENIC | None |