Detailed information of SNP:
|
SNP ID:
sf1203907732(Gbrowse)
Chromosome: chr12 Position: 3907732 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 55.53% | 44.47% |
| All Indica | 791 | 87.99% | 12.01% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 372 | 90.05% | 9.95% |
| Indica II | 209 | 83.25% | 16.75% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203907732 | T->C | INTERGENIC | None |