Detailed information of SNP:
|
SNP ID:
sf1203907844(Gbrowse)
Chromosome: chr12 Position: 3907844 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 55.48% | 44.52% |
| All Indica | 788 | 88.07% | 11.93% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 371 | 90.03% | 9.97% |
| Indica II | 208 | 83.17% | 16.83% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203907844 | T->C | INTERGENIC | None |