Detailed information of SNP:
|
SNP ID:
sf1203925834(Gbrowse)
Chromosome: chr12 Position: 3925834 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 97.38% | 2.62% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 419 | 92.84% | 7.16% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 294 | 98.98% | 1.02% |
| Tropical Japonica | 71 | 66.20% | 33.80% |
| Japonica Intermediate | 54 | 94.44% | 5.56% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203925834 | G->A | INTERGENIC | None |