Detailed information of SNP:



SNP ID: sf1203970723(Gbrowse)

Chromosome: chr12

Position: 3970723
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1414 94.98% 5.02%
All Indica798 100.00% 0.00%
All Japonica493 85.60% 14.40%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate210 100.00% 0.00%
Temperate Japonica333 79.58% 20.42%
Tropical Japonica92 97.83% 2.17%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1203970723 T->C INTERGENIC None