Detailed information of SNP:
SNP ID:
sf1203970723(Gbrowse)
Chromosome: chr12 Position: 3970723 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1414 | 94.98% | 5.02% |
All Indica | 798 | 100.00% | 0.00% |
All Japonica | 493 | 85.60% | 14.40% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 210 | 100.00% | 0.00% |
Temperate Japonica | 333 | 79.58% | 20.42% |
Tropical Japonica | 92 | 97.83% | 2.17% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1203970723 | T->C | INTERGENIC | None |