Detailed information of SNP:
|
SNP ID:
sf1203993552(Gbrowse)
Chromosome: chr12 Position: 3993552 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 94.83% | 5.17% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 490 | 86.12% | 13.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 93.07% | 6.93% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203993552 | G->T | INTERGENIC | None |