Detailed information of SNP:
|
SNP ID:
sf1203994936(Gbrowse)
Chromosome: chr12 Position: 3994936 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 63.64% | 36.36% |
| All Indica | 792 | 43.43% | 56.57% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 370 | 39.19% | 60.81% |
| Indica II | 211 | 55.45% | 44.55% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1203994936 | A->G | INTERGENIC | None |