Detailed information of SNP:
|
SNP ID:
sf1204018343(Gbrowse)
Chromosome: chr12 Position: 4018343 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 88.74% | 11.26% |
| All Indica | 786 | 93.38% | 6.62% |
| All Japonica | 495 | 80.81% | 19.19% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 369 | 99.19% | 0.81% |
| Indica II | 210 | 80.48% | 19.52% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204018343 | A->G | LOC_Os12g07910(LOC_Os12g07910.1) | Non-Synonymous SNP |