Detailed information of SNP:
|
SNP ID:
sf1204018809(Gbrowse)
Chromosome: chr12 Position: 4018809 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 91.88% | 8.12% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 496 | 81.25% | 18.75% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204018809 | A->T | INTERGENIC | None |