Detailed information of SNP:
|
SNP ID:
sf1204021527(Gbrowse)
Chromosome: chr12 Position: 4021527 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 88.90% | 11.10% |
| All Indica | 797 | 93.10% | 6.90% |
| All Japonica | 495 | 81.41% | 18.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 66 | 72.73% | 27.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204021527 | T->G | INTERGENIC | None |