Detailed information of SNP:
|
SNP ID:
sf1204026299(Gbrowse)
Chromosome: chr12 Position: 4026299 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 88.18% | 11.82% |
| All Indica | 768 | 88.93% | 11.07% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 367 | 84.47% | 15.53% |
| Indica II | 205 | 95.12% | 4.88% |
| Indica Intermediate | 196 | 90.82% | 9.18% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204026299 | T->C | INTERGENIC | None |