Detailed information of SNP:
|
SNP ID:
sf1204031355(Gbrowse)
Chromosome: chr12 Position: 4031355 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 71.32% | 28.68% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 26.96% | 73.04% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204031355 | A->G | LOC_Os12g07950(LOC_Os12g07950.1) | UTR_3_PRIME |
| sf1204031355 | A->G | LOC_Os12g07950(LOC_Os12g07950.2) | UTR_3_PRIME |
| sf1204031355 | A->G | LOC_Os12g07950(LOC_Os12g07950.3) | UTR_3_PRIME |