Detailed information of SNP:
|
SNP ID:
sf1204074459(Gbrowse)
Chromosome: chr12 Position: 4074459 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 82.07% | 17.93% |
| All Indica | 797 | 81.93% | 18.07% |
| All Japonica | 497 | 79.07% | 20.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204074459 | C->A | LOC_Os12g08020(LOC_Os12g08020.1) | Non-Synonymous SNP |