Detailed information of SNP:
|
SNP ID:
sf1204090798(Gbrowse)
Chromosome: chr12 Position: 4090798 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 51.73% | 48.27% |
| All Indica | 799 | 80.10% | 19.90% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204090798 | G->C | LOC_Os12g08050(LOC_Os12g08050.1) | Synonymous |