Detailed information of SNP:
|
SNP ID:
sf1204091977(Gbrowse)
Chromosome: chr12 Position: 4091977 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 59.31% | 40.69% |
| All Indica | 794 | 79.60% | 20.40% |
| All Japonica | 497 | 29.78% | 70.22% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 372 | 89.78% | 10.22% |
| Indica II | 212 | 71.70% | 28.30% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 14.33% | 85.67% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204091977 | T->C | LOC_Os12g08050(LOC_Os12g08050.1) | Non-Synonymous SNP |