Detailed information of SNP:
|
SNP ID:
sf1204107868(Gbrowse)
Chromosome: chr12 Position: 4107868 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 91.16% | 8.84% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 492 | 79.27% | 20.73% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 90.12% | 9.88% |
| Tropical Japonica | 90 | 47.78% | 52.22% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204107868 | C->T | INTERGENIC | None |