Detailed information of SNP:
|
SNP ID:
sf1204110642(Gbrowse)
Chromosome: chr12 Position: 4110642 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 95.98% | 4.02% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 474 | 89.24% | 10.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 99.07% | 0.93% |
| Tropical Japonica | 86 | 51.16% | 48.84% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204110642 | G->A | LOC_Os12g08080(LOC_Os12g08080.1) | Non-Synonymous SNP |