Detailed information of SNP:
|
SNP ID:
sf1204132962(Gbrowse)
Chromosome: chr12 Position: 4132962 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 67.22% | 32.78% |
| All Indica | 781 | 88.09% | 11.91% |
| All Japonica | 491 | 32.79% | 67.21% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 362 | 87.85% | 12.15% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 206 | 83.98% | 16.02% |
| Temperate Japonica | 331 | 17.52% | 82.48% |
| Tropical Japonica | 92 | 71.74% | 28.26% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204132962 | G->A | LOC_Os12g08110(LOC_Os12g08110.1) | Synonymous |