Detailed information of SNP:
|
SNP ID:
sf1204158162(Gbrowse)
Chromosome: chr12 Position: 4158162 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1345 | 77.03% | 22.97% |
| All Indica | 726 | 58.26% | 41.74% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 336 | 46.43% | 53.57% |
| Indica II | 199 | 70.35% | 29.65% |
| Indica Intermediate | 191 | 66.49% | 33.51% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204158162 | A->G | INTERGENIC | None |