Detailed information of SNP:
|
SNP ID:
sf1204158180(Gbrowse)
Chromosome: chr12 Position: 4158180 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 94.74% | 5.26% |
| All Indica | 760 | 91.58% | 8.42% |
| All Japonica | 490 | 99.59% | 0.41% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 364 | 93.13% | 6.87% |
| Indica II | 203 | 88.18% | 11.82% |
| Indica Intermediate | 193 | 92.23% | 7.77% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204158180 | T->C | INTERGENIC | None |