Detailed information of SNP:
|
SNP ID:
sf1204158212(Gbrowse)
Chromosome: chr12 Position: 4158212 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 98.08% | 1.92% |
| All Indica | 793 | 96.97% | 3.03% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 209 | 94.74% | 5.26% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204158212 | G->T | INTERGENIC | None |