Detailed information of SNP:
|
SNP ID:
sf1204167963(Gbrowse)
Chromosome: chr12 Position: 4167963 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.65% | 37.35% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204167963 | C->G | LOC_Os12g08150(LOC_Os12g08150.1) | Non-Synonymous SNP |