Detailed information of SNP:
|
SNP ID:
sf1204216046(Gbrowse)
Chromosome: chr12 Position: 4216046 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 82.17% | 17.83% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 80.28% | 19.72% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204216046 | G->A | LOC_Os12g08280(LOC_Os12g08280.1) | INTRON |