Detailed information of SNP:
|
SNP ID:
sf1204219119(Gbrowse)
Chromosome: chr12 Position: 4219119 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 58.99% | 41.01% |
| All Indica | 786 | 91.22% | 8.78% |
| All Japonica | 476 | 7.14% | 92.86% |
| Aus | 63 | 57.14% | 42.86% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 207 | 89.37% | 10.63% |
| Indica Intermediate | 206 | 86.89% | 13.11% |
| Temperate Japonica | 330 | 4.85% | 95.15% |
| Tropical Japonica | 85 | 9.41% | 90.59% |
| Japonica Intermediate | 61 | 16.39% | 83.61% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204219119 | A->C | INTERGENIC | None |