Detailed information of SNP:
|
SNP ID:
sf1204231506(Gbrowse)
Chromosome: chr12 Position: 4231506 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 94.36% | 5.64% |
| All Indica | 784 | 91.96% | 8.04% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 79.69% | 20.31% |
| Indica I | 367 | 88.83% | 11.17% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204231506 | G->A | LOC_Os12g08320(LOC_Os12g08320.1) | Non-Synonymous SNP |