Detailed information of SNP:
|
SNP ID:
sf1204255685(Gbrowse)
Chromosome: chr12 Position: 4255685 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 58.61% | 41.39% |
| All Indica | 779 | 79.72% | 20.28% |
| All Japonica | 479 | 21.09% | 78.91% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 366 | 90.71% | 9.29% |
| Indica II | 210 | 71.90% | 28.10% |
| Indica Intermediate | 203 | 67.98% | 32.02% |
| Temperate Japonica | 330 | 9.39% | 90.61% |
| Tropical Japonica | 87 | 47.13% | 52.87% |
| Japonica Intermediate | 62 | 46.77% | 53.23% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204255685 | A->G | INTERGENIC | None |