Detailed information of SNP:
|
SNP ID:
sf1204259647(Gbrowse)
Chromosome: chr12 Position: 4259647 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 60.74% | 39.26% |
| All Indica | 791 | 85.84% | 14.16% |
| All Japonica | 494 | 22.27% | 77.73% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 373 | 88.47% | 11.53% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 207 | 80.68% | 19.32% |
| Temperate Japonica | 334 | 11.98% | 88.02% |
| Tropical Japonica | 93 | 47.31% | 52.69% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204259647 | T->C | LOC_Os12g08370(LOC_Os12g08370.1) | INTRON |