Detailed information of SNP:
|
SNP ID:
sf1204269066(Gbrowse)
Chromosome: chr12 Position: 4269066 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 50.36% | 49.64% |
| All Indica | 786 | 24.05% | 75.95% |
| All Japonica | 490 | 88.37% | 11.63% |
| Aus | 57 | 70.18% | 29.82% |
| Indica I | 368 | 22.55% | 77.45% |
| Indica II | 211 | 24.17% | 75.83% |
| Indica Intermediate | 207 | 26.57% | 73.43% |
| Temperate Japonica | 333 | 96.40% | 3.60% |
| Tropical Japonica | 92 | 69.57% | 30.43% |
| Japonica Intermediate | 65 | 73.85% | 26.15% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204269066 | T->C | INTERGENIC | None |