Detailed information of SNP:
|
SNP ID:
sf1204270014(Gbrowse)
Chromosome: chr12 Position: 4270014 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 51.80% | 48.20% |
| All Indica | 783 | 26.82% | 73.18% |
| All Japonica | 490 | 88.98% | 11.02% |
| Aus | 64 | 60.94% | 39.06% |
| Indica I | 366 | 25.41% | 74.59% |
| Indica II | 210 | 27.62% | 72.38% |
| Indica Intermediate | 207 | 28.50% | 71.50% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 92 | 72.83% | 27.17% |
| Japonica Intermediate | 64 | 76.56% | 23.44% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204270014 | A->G | INTERGENIC | None |