Detailed information of SNP:
|
SNP ID:
sf1204286869(Gbrowse)
Chromosome: chr12 Position: 4286869 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1354 | 53.69% | 46.31% |
| All Indica | 745 | 74.36% | 25.64% |
| All Japonica | 489 | 21.27% | 78.73% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 344 | 72.38% | 27.62% |
| Indica II | 207 | 78.74% | 21.26% |
| Indica Intermediate | 194 | 73.20% | 26.80% |
| Temperate Japonica | 331 | 9.37% | 90.63% |
| Tropical Japonica | 91 | 45.05% | 54.95% |
| Japonica Intermediate | 67 | 47.76% | 52.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204286869 | G->T | LOC_Os12g08430(LOC_Os12g08430.1) | INTRON |