Detailed information of SNP:
|
SNP ID:
sf1204293384(Gbrowse)
Chromosome: chr12 Position: 4293384 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1350 | 54.15% | 45.85% |
| All Indica | 738 | 30.62% | 69.38% |
| All Japonica | 493 | 92.09% | 7.91% |
| Aus | 64 | 39.06% | 60.94% |
| Indica I | 342 | 38.30% | 61.70% |
| Indica II | 201 | 20.40% | 79.60% |
| Indica Intermediate | 195 | 27.69% | 72.31% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 91 | 80.22% | 19.78% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204293384 | A->T | LOC_Os12g08450(LOC_Os12g08450.1) | Non-Synonymous SNP |