Detailed information of SNP:
|
SNP ID:
sf1204293628(Gbrowse)
Chromosome: chr12 Position: 4293628 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1333 | 59.04% | 40.96% |
| All Indica | 733 | 37.38% | 62.62% |
| All Japonica | 490 | 93.67% | 6.33% |
| Aus | 56 | 42.86% | 57.14% |
| Indica I | 342 | 45.32% | 54.68% |
| Indica II | 199 | 27.64% | 72.36% |
| Indica Intermediate | 192 | 33.33% | 66.67% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 89 | 82.02% | 17.98% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204293628 | A->G | LOC_Os12g08450(LOC_Os12g08450.1) | Synonymous |