Detailed information of SNP:
|
SNP ID:
sf1204293755(Gbrowse)
Chromosome: chr12 Position: 4293755 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1344 | 52.31% | 47.69% |
| All Indica | 748 | 77.27% | 22.73% |
| All Japonica | 478 | 10.88% | 89.12% |
| Aus | 64 | 68.75% | 31.25% |
| Indica I | 348 | 70.11% | 29.89% |
| Indica II | 198 | 87.37% | 12.63% |
| Indica Intermediate | 202 | 79.70% | 20.30% |
| Temperate Japonica | 330 | 3.94% | 96.06% |
| Tropical Japonica | 85 | 28.24% | 71.76% |
| Japonica Intermediate | 63 | 23.81% | 76.19% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204293755 | C->T | LOC_Os12g08450(LOC_Os12g08450.1) | Non-Synonymous SNP |