Detailed information of SNP:
|
SNP ID:
sf1204295366(Gbrowse)
Chromosome: chr12 Position: 4295366 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 53.65% | 46.35% |
| All Indica | 754 | 25.86% | 74.14% |
| All Japonica | 489 | 95.09% | 4.91% |
| Aus | 61 | 57.38% | 42.62% |
| Indica I | 352 | 31.53% | 68.47% |
| Indica II | 203 | 14.78% | 85.22% |
| Indica Intermediate | 199 | 27.14% | 72.86% |
| Temperate Japonica | 331 | 97.89% | 2.11% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204295366 | T->G | LOC_Os12g08450(LOC_Os12g08450.1) | Non-Synonymous SNP |