Detailed information of SNP:
|
SNP ID:
sf1204308274(Gbrowse)
Chromosome: chr12 Position: 4308274 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 89.32% | 10.68% |
| All Indica | 780 | 83.21% | 16.79% |
| All Japonica | 493 | 97.57% | 2.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 79.35% | 20.65% |
| Indica II | 205 | 84.88% | 15.12% |
| Indica Intermediate | 207 | 88.41% | 11.59% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204308274 | G->A | INTERGENIC | None |