Detailed information of SNP:
|
SNP ID:
sf1204311128(Gbrowse)
Chromosome: chr12 Position: 4311128 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 95.84% | 4.16% |
| All Indica | 779 | 96.28% | 3.72% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 62.50% | 37.50% |
| Indica I | 364 | 96.43% | 3.57% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 204 | 93.63% | 6.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204311128 | C->G | LOC_Os12g08500(LOC_Os12g08500.1) | Non-Synonymous SNP |