Detailed information of SNP:
|
SNP ID:
sf1204311542(Gbrowse)
Chromosome: chr12 Position: 4311542 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 94.67% | 5.33% |
| All Indica | 760 | 92.89% | 7.11% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 59 | 91.53% | 8.47% |
| Indica I | 358 | 93.02% | 6.98% |
| Indica II | 202 | 91.58% | 8.42% |
| Indica Intermediate | 200 | 94.00% | 6.00% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204311542 | C->T | LOC_Os12g08500(LOC_Os12g08500.1) | Non-Synonymous SNP |