Detailed information of SNP:
|
SNP ID:
sf1204312201(Gbrowse)
Chromosome: chr12 Position: 4312201 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 65.19% | 34.81% |
| All Indica | 786 | 93.13% | 6.87% |
| All Japonica | 490 | 17.76% | 82.24% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 366 | 93.17% | 6.83% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 331 | 6.34% | 93.66% |
| Tropical Japonica | 92 | 50.00% | 50.00% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204312201 | T->C | LOC_Os12g08500(LOC_Os12g08500.1) | Non-Synonymous SNP |